Changes in version 0.6.1 (2025-05-05)                  

  - allow normalization of pools from same CodeSet as the reference
    pools, e.g. when we want to normalize cross-site replicates. Add
    parameter same_codeset to normalize_pools() so we can use a
    different file name pattern to match for these pools.

                 Changes in version 0.6.0 (2025-04-25)                  

  - Replace magrittr pipe with native pipe, subsequently increase
    minimum R version to 4.2
  - Update read_rcc() to replace gene names PD1 with PD-1 and PDL1 with
    PD-L1

                 Changes in version 0.5.0 (2025-02-05)                  

  - Fix normalize_pools() and normalize_random() functions so they
    actually work
  - Remove magrittr from Suggests
  - Remove deprecated usage of .data

                 Changes in version 0.4.2 (2024-06-11)                  

  - Fix bug in NanoStringQC() where the signal to noise ratio input
    threshold was not being compared against the observed SNR because
    the parameter name was the same as the column name. Hence the
    comparison was against itself, and normFlag only checked the percent
    of genes detected.

                 Changes in version 0.4.1 (2023-08-15)                  

  - Fix warning regarding old-style CITATION
  - Add ORCID to package authors
  - Use GitHub Actions for pkgdown site
  - use stricter R CMD check standard workflow
  - decrease package dependencies: removed epiR, forcats, tibble from
    Imports, moved magrittr to Suggests

                 Changes in version 0.4.0 (2022-08-19)                  

  - new normalize_pools() function to use common pool samples to correct
    for batch effects when normalizing
  - new normalize_random() function to use randomly selected samples as
    the reference for refMethod()

                 Changes in version 0.3.0 (2022-05-24)                  

  - fix calculation of genes detected so that the limit of detection is
    compared in parallel to each sample's counts instead of being
    recycled, #20

  - use GitHub Actions for CI, replacing Travis and Appveyor

  - add gene label "PC_1" for checking smallest positive control

  - more robust extraction of numeric concentrations from PC gene labels

                 Changes in version 0.2.0 (2021-02-06)                  

  - use RCC file names in parsed data of read_rcc(). Also rename gene
    name CD3E to CD3e for compatibility purposes

  - update roxygen

  - remove Rplots.pdf generated from tests, removed deprecated context()

                 Changes in version 0.1.4 (2019-05-09)                  

  - reduce package dependencies from Imports

  - remove old packages from Suggests

  - performance gains in refMethod()

  - raw parameter in NanoStringQC() now accepts tibbles

                 Changes in version 0.1.3 (2019-04-24)                  

  - check for presence of "Positive" and "Negative" genes in
    NanoStringQC()

  - remove most code lints

  - unit tests for read_rcc() and internal functions check_colnames(),
    check_genes()

  - fix bug using NanoStringQC() for single sample data

                 Changes in version 0.1.2 (2019-04-03)                  

  - sort sample names in HLD and OVD cohorts by numeric order, not
    lexicographic order

  - tidy up code in HKnorm()

  - use tidy evaluation in NanostringQC()

  - use vapply() over sapply() for input checking functions

                 Changes in version 0.1.1 (2019-03-25)                  

  - update citation to link to PLOS paper

                 Changes in version 0.1.0 (2019-03-15)                  

  - New submission to CRAN accepted on March 15, 2019