Type: Package
Package: nanostringr
Title: Performs Quality Control, Data Normalization, and Batch Effect
        Correction for 'NanoString nCounter' Data
Version: 0.6.1
Authors@R: c(
    person("Derek", "Chiu", , "dchiu@bccrc.ca", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-7591-4881")),
    person("Aline", "Talhouk", , "atalhouk@bccrc.ca", role = "aut",
           comment = c(ORCID = "0000-0001-7760-410X")),
    person("Samuel", "Leung", , "Samuel.Leung@vch.ca", role = "aut",
           comment = c(ORCID = "0000-0003-0138-7254"))
  )
Description: Provides quality control (QC), normalization, and batch
        effect correction operations for 'NanoString nCounter' data,
        Talhouk et al. (2016) <doi:10.1371/journal.pone.0153844>.
        Various metrics are used to determine which samples passed or
        failed QC.  Gene expression should first be normalized to
        housekeeping genes, before a reference-based approach is used
        to adjust for batch effects.  Raw NanoString data can be
        imported in the form of Reporter Code Count (RCC) files.
License: MIT + file LICENSE
URL: https://github.com/TalhoukLab/nanostringr/,
        https://talhouklab.github.io/nanostringr/
BugReports: https://github.com/TalhoukLab/nanostringr/issues
Depends: R (>= 4.2)
Imports: assertthat, ccaPP, dplyr, purrr, rlang, tibble, tidyr
Suggests: covr, knitr, rmarkdown, testthat
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: TRUE
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Config/pak/sysreqs: libicu-dev
Repository: https://talhouklab.r-universe.dev
Date/Publication: 2025-05-05 18:52:31 UTC
RemoteUrl: https://github.com/talhouklab/nanostringr
RemoteRef: HEAD
RemoteSha: d6a7d23f93082750469e9f10c95b67bb6d2b5684
NeedsCompilation: no
Packaged: 2026-10-09 09:58:39 UTC; root
Author: Derek Chiu [aut, cre] (ORCID: <https://orcid.org/0000-0002-7591-4881>),
  Aline Talhouk [aut] (ORCID: <https://orcid.org/0000-0001-7760-410X>),
  Samuel Leung [aut] (ORCID: <https://orcid.org/0000-0003-0138-7254>)
Maintainer: Derek Chiu <dchiu@bccrc.ca>