Package: nanostringr 0.6.1

Derek Chiu

nanostringr: Performs Quality Control, Data Normalization, and Batch Effect Correction for 'NanoString nCounter' Data

Provides quality control (QC), normalization, and batch effect correction operations for 'NanoString nCounter' data, Talhouk et al. (2016) <doi:10.1371/journal.pone.0153844>. Various metrics are used to determine which samples passed or failed QC. Gene expression should first be normalized to housekeeping genes, before a reference-based approach is used to adjust for batch effects. Raw NanoString data can be imported in the form of Reporter Code Count (RCC) files.

Authors:Derek Chiu [aut, cre], Aline Talhouk [aut], Samuel Leung [aut]

nanostringr_0.6.1.tar.gz
nanostringr_0.6.1.zip(r-4.7)nanostringr_0.6.1.zip(r-4.6)nanostringr_0.6.1.zip(r-4.5)
nanostringr_0.6.1.tgz(r-4.6-any)nanostringr_0.6.1.tgz(r-4.5-any)
nanostringr_0.6.1.tar.gz(r-4.7-any)nanostringr_0.6.1.tar.gz(r-4.6-any)
nanostringr_0.6.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
nanostringr/json (API)
NEWS

# Install 'nanostringr' in R:
install.packages('nanostringr', repos = c('https://talhouklab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/talhouklab/nanostringr/issues

Pkgdown/docs site:https://talhouklab.github.io

Datasets:
  • expQC - Expression QC data
  • hld.r - NanoString Experiment Cohorts
  • hlo.r - NanoString Experiment Cohorts
  • ovc.r - NanoString Experiment Cohorts
  • ovd.r - NanoString Experiment Cohorts
  • ovo.r - NanoString Experiment Cohorts

On CRAN:

Conda:

4.71 score 6 stars 17 scripts 647 downloads 9 exports 28 dependencies

Last updated from:d6a7d23f93. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK138
source / vignettesOK184
linux-release-x86_64OK133
macos-release-arm64OK75
macos-oldrel-arm64OK84
windows-develOK79
windows-releaseOK78
windows-oldrelOK77
wasm-releaseOK116

Exports:CCplotHKnormNanoStringQCnormalize_poolsnormalize_randomparse_attributesparse_countsread_rccrefMethod

Dependencies:assertthatccaPPclicpp11DEoptimRdplyrgenericsgluelifecyclemagrittrmvtnormpcaPPpillarpkgconfigpurrrR6RcppRcppArmadillorlangrobustbasestringistringrtibbletidyrtidyselectutf8vctrswithr

nanostringr Package

Rendered fromOverview.Rmdusingknitr::rmarkdownon May 09 2026.

Last update: 2025-02-01
Started: 2016-09-08